Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1717

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1716: 10084 - K14799 TSR1 pre-rRNA-processing protein TSR1, at 21403 to 24344 10084 mRNA_1717: 10085 - HMMPfam-Per1-like-PF04080, at 24723 to 26291 10085 mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26598 to 27052 10086

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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24,468 + -0.2
24,469 - 3.5
24,578 - 1.6
24,582 - 1.4
24,586 - 0.6
24,589 + 0.5
24,592 - -0.8
24,592 - 2.5
24,592 - -0.1
24,592 - 1.2
24,602 + -0.5
24,634 + 2.2
24,662 + 0.0
24,811 + 0.9
25,015 - 10085 mRNA_1717 0.19 0.2
25,028 - 10085 mRNA_1717 0.19 2.0
25,080 + 10085 mRNA_1717 0.23 0.4
25,083 - 10085 mRNA_1717 0.23 -0.8
25,091 - 10085 mRNA_1717 0.23 0.8
25,235 + 10085 mRNA_1717 0.33 -0.3
25,318 - 10085 mRNA_1717 0.38 1.2
25,323 - 10085 mRNA_1717 0.38 1.0
25,324 - 10085 mRNA_1717 0.38 1.8
25,339 - 10085 mRNA_1717 0.39 -0.2
25,674 - 10085 mRNA_1717 0.61 -0.1
25,964 + 10085 mRNA_1717 0.79 1.5
26,071 + 10085 mRNA_1717 0.86 -0.4
26,135 + 1.9
26,229 + 0.5
26,263 - -0.1
26,363 + 1.6
26,377 + 1.3
26,383 - 0.1
26,390 + 2.0
26,413 + 0.4
26,493 - 1.2
26,509 - 0.2
26,511 - 0.3
26,520 + 0.8
27,099 + 0.4
27,101 - 0.3
27,102 + 0.6
27,105 - 0.5
27,136 + -1.3
27,226 - 0.2