Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1713

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12015 to 13653 10080 mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15983 to 18222 10082

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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13,057 + 10080 mRNA_1712 0.64 -0.1
13,118 - 10080 mRNA_1712 0.67 1.8
13,215 + 10080 mRNA_1712 0.73 0.5
13,277 + 10080 mRNA_1712 0.77 2.5
13,521 + 0.4
13,805 - 0.5
13,961 - 1.5
13,969 + 0.6
13,990 - -0.4
14,076 - 0.7
14,109 - 0.8
14,130 - 0.3
14,146 + 0.2
14,250 + 10081 mRNA_1713 0.16 0.5
14,354 - 10081 mRNA_1713 0.22 0.6
14,391 + 10081 mRNA_1713 0.24 2.8
14,404 + 10081 mRNA_1713 0.25 1.2
14,417 + 10081 mRNA_1713 0.26 -0.6
14,429 + 10081 mRNA_1713 0.27 0.7
14,465 - 10081 mRNA_1713 0.29 1.5
14,506 - 10081 mRNA_1713 0.31 0.3
14,607 - 10081 mRNA_1713 0.37 1.6
14,615 - 10081 mRNA_1713 0.38 0.7
14,617 + 10081 mRNA_1713 0.38 1.0
14,639 + 10081 mRNA_1713 0.39 -1.1
14,689 - 10081 mRNA_1713 0.42 -0.5
14,710 + 10081 mRNA_1713 0.43 0.1
14,742 - 10081 mRNA_1713 0.45 1.3
14,781 - 10081 mRNA_1713 0.48 0.0
14,823 - 10081 mRNA_1713 0.50 0.9
14,823 - 10081 mRNA_1713 0.50 0.9
14,823 - 10081 mRNA_1713 0.50 -0.3
14,851 - 10081 mRNA_1713 0.52 1.0
15,035 - 10081 mRNA_1713 0.63 1.0
15,147 + 10081 mRNA_1713 0.69 0.9
15,168 - 10081 mRNA_1713 0.71 0.6
15,195 - 10081 mRNA_1713 0.72 0.6
15,332 - 10081 mRNA_1713 0.81 -0.0
15,394 + 10081 mRNA_1713 0.84 0.9
15,422 - 10081 mRNA_1713 0.86 0.6
15,438 + 10081 mRNA_1713 0.87 -1.4
15,528 + -1.6
15,531 - 0.6
15,579 + 0.6
15,588 - 1.6
15,708 - -0.2
15,756 - 1.2
15,831 - 0.3
15,850 - 0.1
15,852 - -0.7
15,853 - -0.5
15,856 - 1.4
15,858 + -0.4
15,860 - 1.5
15,861 + 1.3
15,879 + 1.1
15,887 - 0.5
15,889 - 0.1
15,897 + -0.7
15,897 + 0.3
16,049 + -0.0
16,192 - -0.3
16,253 - 10082 mRNA_1714 0.12 2.0
16,353 + 10082 mRNA_1714 0.17 0.6
16,433 - 10082 mRNA_1714 0.20 1.6
16,475 - 10082 mRNA_1714 0.22 -0.2
16,614 + 10082 mRNA_1714 0.28 -0.3