Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1709

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077 mRNA_1710: 10078 - Hypothetical Protein, at 7999 to 8750 10078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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4,055 + 10076 mRNA_1708 0.32 -0.9
4,063 - 10076 mRNA_1708 0.33 0.4
4,072 - 10076 mRNA_1708 0.35 1.2
4,093 - 10076 mRNA_1708 0.38 0.2
4,363 - 10076 mRNA_1708 0.82 1.4
4,363 - 10076 mRNA_1708 0.82 0.4
4,421 - -0.0
4,425 - -2.3
4,425 + 1.8
4,432 + 0.5
4,432 + 0.5
4,482 - -1.0
4,533 - 0.4
4,540 + -0.6
4,567 - -0.2
4,597 + -1.7
4,702 + 2.0
4,933 - -0.3
4,939 - 0.6
5,001 - 0.3
5,089 - 0.5
5,089 - 0.3
5,092 + 1.3
5,117 + 0.5
5,290 + 10077 mRNA_1709 0.11 -0.5
5,296 + 10077 mRNA_1709 0.11 -1.1
5,365 + 10077 mRNA_1709 0.14 0.6
5,371 + 10077 mRNA_1709 0.14 0.8
5,372 + 10077 mRNA_1709 0.14 -0.5
5,424 + 10077 mRNA_1709 0.16 1.9
5,513 - 10077 mRNA_1709 0.20 2.0
5,634 - 10077 mRNA_1709 0.25 0.7
5,659 + 10077 mRNA_1709 0.26 -1.6
5,681 - 10077 mRNA_1709 0.27 1.9
5,681 - 10077 mRNA_1709 0.27 -0.2
5,694 - 10077 mRNA_1709 0.28 1.6
5,726 + 10077 mRNA_1709 0.29 0.4
5,809 + 10077 mRNA_1709 0.32 1.0
5,926 + 10077 mRNA_1709 0.37 -0.2
6,007 + 10077 mRNA_1709 0.41 0.3
6,120 + 10077 mRNA_1709 0.45 1.7
6,140 + 10077 mRNA_1709 0.46 -0.7
6,238 - 10077 mRNA_1709 0.50 0.4
6,244 - 10077 mRNA_1709 0.50 1.0
6,245 + 10077 mRNA_1709 0.50 -0.3
6,249 + 10077 mRNA_1709 0.51 1.3
6,318 + 10077 mRNA_1709 0.54 1.0
6,468 - 10077 mRNA_1709 0.60 2.0
6,474 + 10077 mRNA_1709 0.60 0.0
6,541 + 10077 mRNA_1709 0.63 0.2
6,563 + 10077 mRNA_1709 0.64 2.4
6,583 + 10077 mRNA_1709 0.64 -1.7
6,590 + 10077 mRNA_1709 0.65 2.2
6,688 + 10077 mRNA_1709 0.69 -1.4
6,704 + 10077 mRNA_1709 0.70 2.0
7,174 + 10077 mRNA_1709 0.89 1.9
7,276 + 2.2
7,408 + 0.2
7,596 - -1.0
7,805 + -0.3
7,859 + -0.7
7,859 + 0.9
7,901 - 0.4
7,922 + -0.8
7,992 - 0.4
8,039 + -0.7
8,042 - -0.2
8,047 + 0.4
8,068 + 1.8
8,234 + 10078 mRNA_1710 0.31 0.3
8,331 + 10078 mRNA_1710 0.44 0.8
8,341 - 10078 mRNA_1710 0.45 -0.8