Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1642

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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787,821 - 10009 mRNA_1641 0.87 -0.7
788,709 + -0.0
788,710 + -0.7
788,831 - -0.1
788,866 + -0.6
788,890 + 10010 mRNA_1642 0.12 -0.1
788,971 - 10010 mRNA_1642 0.18 -1.1
788,989 - 10010 mRNA_1642 0.20 -1.0
788,990 - 10010 mRNA_1642 0.20 -1.1
788,998 + 10010 mRNA_1642 0.21 -1.4
789,136 + 10010 mRNA_1642 0.32 -1.1
789,303 + 10010 mRNA_1642 0.46 -0.0
789,439 - 10010 mRNA_1642 0.58 -1.4
789,465 - 10010 mRNA_1642 0.60 -1.0
789,547 + 10010 mRNA_1642 0.67 -0.2
789,620 + 10010 mRNA_1642 0.73 -1.3
790,019 + -0.7
790,026 - 0.5
790,048 - 3.4
790,057 + 1.4
790,139 - 2.0
790,167 + 0.2
790,184 - 0.3
790,201 + -1.4
790,337 - 0.2
790,348 + 1.0
790,350 - -0.9
790,353 - 0.6
790,359 - -3.1
790,487 - 0.1
790,490 + 0.8
790,496 - 0.9
790,508 + -0.2
790,646 - 10011 mRNA_1643 0.10 -0.1
790,648 + 10011 mRNA_1643 0.10 -0.6