Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1637

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005 mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009 10006

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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772,944 - 10004 mRNA_1636 0.55 1.0
773,061 + 10004 mRNA_1636 0.62 -0.3
773,346 + 10004 mRNA_1636 0.78 -0.8
773,359 - 10004 mRNA_1636 0.79 0.1
773,375 - 10004 mRNA_1636 0.80 -1.7
773,737 - 2.3
773,812 - 1.3
773,978 - 1.4
773,978 + -0.2
774,123 - 10005 mRNA_1637 0.14 0.1
774,233 - 10005 mRNA_1637 0.20 0.4
774,366 + 10005 mRNA_1637 0.28 1.1
774,419 + 10005 mRNA_1637 0.31 1.8
774,744 + 10005 mRNA_1637 0.51 0.0
774,782 - 10005 mRNA_1637 0.53 -0.2
775,008 + 10005 mRNA_1637 0.66 2.4
775,013 + 10005 mRNA_1637 0.67 2.3
775,074 + 10005 mRNA_1637 0.70 -0.3
775,268 - 10005 mRNA_1637 0.82 0.2
775,358 - 10005 mRNA_1637 0.87 0.9
775,464 - 1.5
775,467 - -0.0
775,482 + 1.7
775,631 + 0.7
775,764 - 0.3
776,049 - -0.5
776,083 - 0.0
776,161 - 1.3
776,524 - 0.0