Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1635

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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766,315 + -0.7
766,328 - -0.6
766,600 + -0.1
766,603 + 1.4
766,908 - 1.0
766,909 + 1.6
766,909 + 0.0
767,051 + 0.2
767,053 - -1.4
767,178 - 1.3
767,189 - -0.4
767,966 + 10003 mRNA_1635 0.17 -0.1
768,476 + 10003 mRNA_1635 0.28 0.4
768,483 - 10003 mRNA_1635 0.28 2.6
769,727 + 10003 mRNA_1635 0.55 -0.7
769,771 + 10003 mRNA_1635 0.56 -1.1
769,784 - 10003 mRNA_1635 0.57 -0.8
769,944 - 10003 mRNA_1635 0.60 -1.5
770,067 - 10003 mRNA_1635 0.63 -0.6
770,394 - 10003 mRNA_1635 0.70 0.7
770,554 + 10003 mRNA_1635 0.74 -1.1
770,913 + 10003 mRNA_1635 0.81 -0.7
770,994 - 10003 mRNA_1635 0.83 0.0
771,012 + 10003 mRNA_1635 0.84 -0.8
771,034 + 10003 mRNA_1635 0.84 2.2
771,427 + 0.1
771,456 + 3.1
771,487 + 1.6
771,580 + 0.1
771,761 - 0.1
771,892 - -0.4
771,899 - 0.0
772,036 + -0.0
772,037 - 0.9
772,046 - 0.2
772,181 - -0.8
772,185 - -0.3
772,339 - 10004 mRNA_1636 0.19 0.5
772,355 + 10004 mRNA_1636 0.20 0.5
772,363 + 10004 mRNA_1636 0.20 -0.6
772,365 - 10004 mRNA_1636 0.20 1.4
772,447 + 10004 mRNA_1636 0.25 0.5
772,488 - 10004 mRNA_1636 0.28 -0.7
772,644 - 10004 mRNA_1636 0.37 1.4