Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1606

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1605: 9973 - Hypothetical Protein, at 703733 to 704608 9973 mRNA_1606: 9974 - Hypothetical Protein, at 705021 to 705665 9974 mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706172 to 709618 9975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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704,175 - 9973 mRNA_1605 0.50 0.3
704,288 + 9973 mRNA_1605 0.63 1.7
704,464 - 9973 mRNA_1605 0.83 1.1
704,584 - 0.8
704,592 + -0.1
704,920 + 0.5
704,924 + 1.6
704,948 - 1.0
705,219 - 9974 mRNA_1606 0.31 -1.3
705,342 + 9974 mRNA_1606 0.50 -0.6
705,650 + -0.5
705,839 - 1.4
705,946 + 0.6
705,982 - 0.4
706,004 - 0.5
706,016 - 0.1
706,095 - 0.4
706,096 + 0.7
706,110 + -0.4
706,427 + -0.1
706,438 - 0.6
706,522 + 9975 mRNA_1607 0.10 1.3