Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1587

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1586: 9954 - BLAST ribosomal protein [Moniliophthora roreri MCA 2997], at 660878 to 663649 9954 mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664438 to 664902 9955 mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665210 to 666583 9956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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663,781 - 0.2
663,802 + 1.7
663,814 - -0.7
663,889 - 2.3
664,160 - 0.8
664,200 + -1.3
664,212 - -2.5
664,213 - -0.3
664,272 + 0.4
664,322 - -0.3
664,324 + 1.2
664,353 - -1.8
664,364 + 0.0
664,370 + 2.4
664,441 - -0.6
664,530 - 9955 mRNA_1587 0.20 -0.1
664,551 - 9955 mRNA_1587 0.24 -0.0
664,682 - 9955 mRNA_1587 0.52 1.4
664,794 - 9955 mRNA_1587 0.77 -2.1
664,810 - 9955 mRNA_1587 0.80 -0.3
664,942 + 0.2
664,970 - 0.1
664,989 - 2.1
665,109 - 1.0
665,116 + 0.9
665,136 + 0.4
665,256 - -0.4
665,262 + -1.0
665,263 + -1.3
665,294 + -0.1
665,302 + 0.6
665,405 - 9956 mRNA_1588 0.14 1.3
665,452 - 9956 mRNA_1588 0.18 1.3
665,565 - 9956 mRNA_1588 0.26 0.5
665,581 + 9956 mRNA_1588 0.27 1.2
665,589 + 9956 mRNA_1588 0.28 1.2
665,742 + 9956 mRNA_1588 0.39 0.1