Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1550

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1549: 9917 - BLAST putative TspO/MBR family containing protein [Rhizocto..., at 568669 to 569316 9917 mRNA_1550: 9918 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 569375 to 570862 9918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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568,444 - 0.5
568,450 - 1.9
568,461 + 1.2
568,583 + -0.8
568,864 - 9917 mRNA_1549 0.30 0.2
568,905 + 9917 mRNA_1549 0.36 1.2
568,919 - 9917 mRNA_1549 0.39 -0.1
569,026 - 9917 mRNA_1549 0.55 2.6
569,044 + 9917 mRNA_1549 0.58 0.0
569,189 + 9917 mRNA_1549 0.80 -0.9
569,311 + 0.1
569,342 + -0.4
569,465 - 0.5
569,468 + 0.5
569,875 - 9918 mRNA_1550 0.34 -1.8
570,473 - 9918 mRNA_1550 0.74 -1.3
570,499 - 9918 mRNA_1550 0.76 1.6
570,500 + 9918 mRNA_1550 0.76 -1.1
570,614 - 9918 mRNA_1550 0.83 1.2
570,636 + 9918 mRNA_1550 0.85 -0.2
570,644 + 9918 mRNA_1550 0.85 0.1
570,915 + -0.5
570,946 + 1.0
571,044 - 0.1
571,191 - 0.6
571,212 + 1.8
571,239 + 2.0
571,343 - 0.1
571,468 + -1.1
571,491 - 1.4
571,510 - 0.5
571,516 + 0.9
571,525 - -2.6
571,536 + 0.3
571,561 - -0.1
571,591 + 0.8
571,619 - 1.7
571,643 - 0.6
571,646 - 0.3
571,655 + -0.3
571,674 + 0.6
571,676 + 0.1
571,711 + -0.2
571,809 - 0.9
571,816 - 0.5
571,818 - 1.3