Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1536

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1535: 9903 - K12471 EPN epsin, at 532822 to 534645 9903 mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534766 to 537382 9904 mRNA_1537: 9905 - K05284 PIGM phosphatidylinositol glycan, class M, at 537720 to 539172 9905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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534,236 + 9903 mRNA_1535 0.78 -0.0
534,476 + -1.1
534,492 - 0.4
534,505 - 0.7
534,751 - -0.1
534,774 + 1.4
535,529 - 9904 mRNA_1536 0.29 -0.6
535,554 + 9904 mRNA_1536 0.30 -2.3
535,656 + 9904 mRNA_1536 0.34 2.6
535,744 - 9904 mRNA_1536 0.37 0.4
535,779 - 9904 mRNA_1536 0.39 0.7
535,918 - 9904 mRNA_1536 0.44 1.6
535,919 - 9904 mRNA_1536 0.44 -0.3
536,161 + 9904 mRNA_1536 0.53 -0.2
536,205 - 9904 mRNA_1536 0.55 1.7
536,394 + 9904 mRNA_1536 0.62 1.4
536,620 - 9904 mRNA_1536 0.71 2.3
536,840 + 9904 mRNA_1536 0.79 -0.3
536,970 - 9904 mRNA_1536 0.84 0.8
537,012 + 9904 mRNA_1536 0.86 2.1
537,426 + 1.0
537,432 + -0.4
537,434 - -1.0
537,437 + 1.1
537,554 - 1.4
537,571 + -0.2
537,571 + 1.5
537,738 - -0.0