Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1535

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530272 to 532362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532822 to 534645 9903 mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534766 to 537382 9904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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531,979 - 9902 mRNA_1534 0.82 0.6
531,996 + 9902 mRNA_1534 0.82 -0.2
532,413 - -0.1
532,415 - -0.1
532,419 - 0.0
532,426 + -0.3
532,428 - 1.0
532,433 + -0.3
532,435 + -0.4
532,442 + 2.1
532,444 + 0.1
532,573 - 2.0
532,576 - 0.7
532,578 - 1.1
532,580 + -0.5
532,714 + -0.4
532,717 - 1.4
532,718 + 0.5
532,720 - -0.6
532,741 + 1.3
533,032 + 9903 mRNA_1535 0.12 -0.4
533,325 + 9903 mRNA_1535 0.28 2.0
533,615 + 9903 mRNA_1535 0.43 1.3
534,236 + 9903 mRNA_1535 0.78 -0.0
534,476 + -1.1
534,492 - 0.4
534,505 - 0.7
534,751 - -0.1
534,774 + 1.4
535,529 - 9904 mRNA_1536 0.29 -0.6
535,554 + 9904 mRNA_1536 0.30 -2.3