Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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487,453 - 9882 mRNA_1514 0.51 1.0
487,913 - 9882 mRNA_1514 0.79 -0.7
488,058 + 9882 mRNA_1514 0.87 0.5
488,073 + 9882 mRNA_1514 0.88 1.5
488,166 - 1.7
488,185 - 0.6
488,341 - 1.3
488,372 + -0.2
488,382 - 0.5
488,493 - -0.9
488,498 - 1.3
488,500 - 0.8
488,505 + 2.1
488,513 + 1.9
488,521 + -1.5
488,647 + 0.7
488,793 + 9883 mRNA_1515 0.11 1.8
488,822 + 9883 mRNA_1515 0.11 0.4
488,926 + 9883 mRNA_1515 0.15 -0.4
489,243 + 9883 mRNA_1515 0.24 0.0
489,275 + 9883 mRNA_1515 0.25 1.0
489,584 - 9883 mRNA_1515 0.35 1.5
489,709 - 9883 mRNA_1515 0.38 -0.0
489,788 + 9883 mRNA_1515 0.41 -0.1
490,130 + 9883 mRNA_1515 0.51 -0.2
490,246 - 9883 mRNA_1515 0.55 0.2
490,385 - 9883 mRNA_1515 0.59 -0.9
490,566 - 9883 mRNA_1515 0.64 0.3
490,610 - 9883 mRNA_1515 0.66 1.0
491,018 + 9883 mRNA_1515 0.78 -1.4
491,321 - 9883 mRNA_1515 0.87 -0.4
491,327 - 9883 mRNA_1515 0.87 -0.4
491,483 - 0.9
491,490 + 0.4
491,616 - -0.6
491,636 - 0.1
491,753 + 0.7
491,756 - 0.4
491,758 + -0.1
491,759 + -1.2
491,896 - -0.0
491,900 + -0.0
491,904 - 0.4
491,910 - 0.1
491,912 + -0.9
491,932 - 1.3
492,072 + -0.1
492,074 - 0.6
492,076 - 0.2
492,128 + -0.1
492,133 - 1.6
492,204 - 1.3