Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1514

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1513: 9881 - K13280 SEC11, sipW signal peptidase, endoplasmic reticulum-type, at 485460 to 486499 9881 mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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486,584 - 0.0
486,595 + 1.6
486,703 - 0.8
486,864 + 9882 mRNA_1514 0.16 -0.0
486,866 + 9882 mRNA_1514 0.16 -0.5
487,453 - 9882 mRNA_1514 0.51 1.0
487,913 - 9882 mRNA_1514 0.79 -0.7
488,058 + 9882 mRNA_1514 0.87 0.5
488,073 + 9882 mRNA_1514 0.88 1.5
488,166 - 1.7
488,185 - 0.6
488,341 - 1.3
488,372 + -0.2
488,382 - 0.5
488,493 - -0.9
488,498 - 1.3
488,500 - 0.8
488,505 + 2.1
488,513 + 1.9
488,521 + -1.5
488,647 + 0.7
488,793 + 9883 mRNA_1515 0.11 1.8
488,822 + 9883 mRNA_1515 0.11 0.4
488,926 + 9883 mRNA_1515 0.15 -0.4
489,243 + 9883 mRNA_1515 0.24 0.0