Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1512

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478426 to 481591 9879 mRNA_1512: 9880 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 481811 to 485314 9880 mRNA_1513: 9881 - K13280 SEC11, sipW signal peptidase, endoplasmic reticulum-type, at 485460 to 486499 9881

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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481,461 - 1.5
481,703 - -0.5
482,238 - 9880 mRNA_1512 0.12 -2.1
482,265 - 9880 mRNA_1512 0.13 -0.1
482,298 + 9880 mRNA_1512 0.14 -1.4
482,584 - 9880 mRNA_1512 0.22 -1.0
482,602 + 9880 mRNA_1512 0.23 0.7
482,713 + 9880 mRNA_1512 0.26 0.8
482,896 + 9880 mRNA_1512 0.31 -0.3
483,293 - 9880 mRNA_1512 0.42 0.1
483,326 - 9880 mRNA_1512 0.43 -2.2
483,327 - 9880 mRNA_1512 0.43 0.1
483,336 - 9880 mRNA_1512 0.44 -0.6
483,342 + 9880 mRNA_1512 0.44 -0.4
483,348 - 9880 mRNA_1512 0.44 -0.1
483,485 + 9880 mRNA_1512 0.48 -0.6
483,613 + 9880 mRNA_1512 0.51 1.4
483,627 - 9880 mRNA_1512 0.52 1.4
483,628 + 9880 mRNA_1512 0.52 0.7
483,638 - 9880 mRNA_1512 0.52 -0.4
483,640 + 9880 mRNA_1512 0.52 -0.8
483,779 - 9880 mRNA_1512 0.56 -1.3
483,808 - 9880 mRNA_1512 0.57 -2.8
483,923 + 9880 mRNA_1512 0.60 0.1
483,948 + 9880 mRNA_1512 0.61 0.1
483,965 - 9880 mRNA_1512 0.61 1.0
483,991 - 9880 mRNA_1512 0.62 0.0
484,106 - 9880 mRNA_1512 0.65 0.9
484,256 - 9880 mRNA_1512 0.70 -0.6
484,398 - 9880 mRNA_1512 0.74 -0.0
484,539 - 9880 mRNA_1512 0.78 0.0
484,820 + 9880 mRNA_1512 0.86 0.3
484,853 + 9880 mRNA_1512 0.87 -0.2
485,125 + -0.2
485,127 - 1.3
485,259 - -0.8
485,268 + -1.3
485,276 - 1.7
485,279 - -0.2
485,280 - -0.4
485,296 - 1.8
485,417 - 1.8
485,429 - 0.5
485,430 - -0.5
485,439 + 1.1