Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1493

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434341 to 437683 9860 mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437821 to 440939 9861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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437,829 - -0.7
437,836 + 0.2
438,107 - -0.3
438,253 + 9861 mRNA_1493 0.14 -0.4
438,265 + 9861 mRNA_1493 0.14 0.8
438,349 - 9861 mRNA_1493 0.17 -0.3
438,527 - 9861 mRNA_1493 0.23 1.1
438,544 - 9861 mRNA_1493 0.23 0.7
438,629 - 9861 mRNA_1493 0.26 0.1
439,559 - 9861 mRNA_1493 0.56 0.7
439,862 + 9861 mRNA_1493 0.65 0.6
440,023 - 9861 mRNA_1493 0.71 0.5
440,170 + 9861 mRNA_1493 0.75 1.0
440,396 - 9861 mRNA_1493 0.83 1.5
440,556 - 9861 mRNA_1493 0.88 0.3
441,030 - -0.6
441,152 - -0.2
441,170 + -0.6
441,184 - 0.4
441,207 + 1.8
441,239 + -0.0
441,317 - 1.1
441,336 + -0.0
441,345 - 0.7
441,353 + -0.3
441,354 + -0.9
441,370 - 0.1
441,375 - 0.9
441,376 + -0.3
441,376 + 0.6
441,379 - 2.4
441,384 + -0.1
441,387 - 0.4
441,433 + 1.6
441,460 + 0.7
441,478 - -0.3
441,498 - 2.5
441,504 - 0.6
441,509 - 0.0
441,520 + 0.5
441,527 + -0.1
441,612 - 1.6
441,622 + 0.8
441,756 - 0.4
441,821 - -0.5
441,822 + 0.2
441,825 - -0.6
441,853 - 0.3