Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1474

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842 mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391835 to 393525 9843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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387,475 + 9841 mRNA_1473 0.87 -0.5
387,634 + 0.1
387,636 + 1.2
387,740 + 0.3
387,910 + 0.0
387,940 + -0.1
388,059 - 1.1
388,062 + -1.0
388,064 - -0.2
388,199 - -1.2
388,205 - -0.2
388,219 - -0.2
388,223 - 0.0
388,229 - 0.1
388,229 + -0.3
388,230 + 0.2
388,235 - 0.1
388,235 + 0.4
388,235 + 2.7
388,238 + 2.1
388,240 + 2.2
388,246 + 0.4
388,251 + 0.4
388,255 - 0.9
388,345 + 0.2
388,365 - -1.0
388,388 + 1.2
388,396 + 1.0
388,502 - 0.3
388,670 - 1.0
388,734 - 0.1
388,795 + 9842 mRNA_1474 0.12 0.2
389,377 - 9842 mRNA_1474 0.32 -0.0
389,817 + 9842 mRNA_1474 0.47 0.3
389,963 + 9842 mRNA_1474 0.52 -0.1
389,965 - 9842 mRNA_1474 0.52 -0.3
390,260 + 9842 mRNA_1474 0.62 0.1
390,261 - 9842 mRNA_1474 0.62 -1.3
390,413 + 9842 mRNA_1474 0.68 -0.4
390,454 + 9842 mRNA_1474 0.69 -0.7
390,565 - 9842 mRNA_1474 0.73 0.4
390,574 - 9842 mRNA_1474 0.73 -0.2
391,012 + 9842 mRNA_1474 0.88 -0.1
391,137 - 1.2
391,292 + 0.2
391,424 - 0.5
391,445 + 1.4
391,445 - 0.4
391,567 + 0.5
391,588 - 0.2
391,594 + 1.6