Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1467

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352655 to 354087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354447 to 358959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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353,973 - -0.3
353,985 + 1.7
354,103 - 1.1
354,124 - -0.2
354,184 + 0.5
354,210 + 0.8
354,220 - 0.4
354,232 - -0.3
354,241 - -0.1
354,252 + -0.3
354,297 - -0.6
354,339 - -0.2
354,341 + 1.2
354,360 + 0.2
354,365 + 0.1
354,382 + -0.0
354,411 + 0.3
354,424 - 0.6
354,433 - -0.1
354,514 + 1.2
354,540 + 0.3
354,543 + 0.8
354,552 + 0.5
354,592 + 0.2
354,689 - 0.5
354,713 - 1.6
354,720 - -0.3
354,740 + 0.5
354,814 + 2.4
354,859 - 1.5
354,864 + -0.3
355,155 + 9835 mRNA_1467 0.16 1.1
355,433 + 9835 mRNA_1467 0.22 -1.1
356,458 + 9835 mRNA_1467 0.45 2.6
356,610 - 9835 mRNA_1467 0.48 -0.5
356,707 + 9835 mRNA_1467 0.50 0.6
357,503 + 9835 mRNA_1467 0.68 0.1
357,512 + 9835 mRNA_1467 0.68 1.6
357,633 - 9835 mRNA_1467 0.71 0.8
357,796 + 9835 mRNA_1467 0.74 0.2
358,063 - 9835 mRNA_1467 0.80 1.8
358,096 + 9835 mRNA_1467 0.81 -0.2
358,178 + 9835 mRNA_1467 0.83 -0.1
358,816 + -1.1
358,964 + 1.0
359,128 - 0.3
359,131 + 0.8
359,845 - 1.5