Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1461

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344701 to 345995 9828 mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346696 to 347592 9829 mRNA_1462: 9830 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 347942 to 349022 9830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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345,883 + -0.5
345,887 - -2.7
345,887 - 2.3
346,045 + -0.9
346,183 - -0.8
346,184 - -0.4
346,320 - 1.3
346,483 + 1.0
346,504 - -0.3
346,922 + 9829 mRNA_1461 0.25 0.8
347,199 + 9829 mRNA_1461 0.56 1.4
347,208 + 9829 mRNA_1461 0.57 1.0
347,287 + 9829 mRNA_1461 0.66 -0.1
347,330 + 9829 mRNA_1461 0.71 0.6
347,489 + 9829 mRNA_1461 0.88 0.2
347,761 + 3.0
347,872 + 0.6