Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1447

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303145 to 306587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307275 to 311482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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306,550 + 2.3
306,798 + 0.4
307,047 - -0.7
307,059 + 2.0
307,214 + 0.8
307,215 - 0.6
307,518 + 1.6
308,081 + 9815 mRNA_1447 0.19 0.4
308,361 + 9815 mRNA_1447 0.26 0.3
308,391 + 9815 mRNA_1447 0.27 -0.5
308,397 + 9815 mRNA_1447 0.27 0.5
308,518 + 9815 mRNA_1447 0.30 1.1
308,655 + 9815 mRNA_1447 0.33 -0.3
308,666 + 9815 mRNA_1447 0.33 -0.6
308,815 - 9815 mRNA_1447 0.37 -0.5
308,992 + 9815 mRNA_1447 0.41 0.0
309,073 - 9815 mRNA_1447 0.43 -0.5
309,825 + 9815 mRNA_1447 0.61 -1.1
310,070 - 9815 mRNA_1447 0.66 0.8
310,124 + 9815 mRNA_1447 0.68 1.8
310,255 + 9815 mRNA_1447 0.71 -1.0
310,405 - 9815 mRNA_1447 0.74 -3.2
310,499 - 9815 mRNA_1447 0.77 0.1
310,679 - 9815 mRNA_1447 0.81 0.9
310,871 - 9815 mRNA_1447 0.85 0.5
311,184 - -0.0
311,479 - 0.3
311,498 - 0.2
311,499 + 0.5
311,502 - 0.2
311,517 + 0.5
311,553 - -0.5
311,587 + 2.2
311,605 + 0.5
311,631 + 2.0
311,636 + -0.3
311,662 - 0.5
311,690 + -0.1
311,703 + 1.0
311,707 - 0.0
311,712 - 1.5
311,718 + 1.4
311,729 - 0.5
311,729 - 1.0
311,735 - 0.9
311,736 + 2.2
311,742 + 1.6
311,756 + 2.9
311,889 - 1.1
311,895 + 1.3
312,208 - -1.1
312,333 - -1.7
312,336 + -0.0
312,348 - 0.5