Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1433

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267491 to 268796 9800 mRNA_1433: 9801 - K17081 PHB2 prohibitin 2, at 269247 to 270588 9801 mRNA_1434: 9802 - Hypothetical Protein, at 270891 to 274299 9802

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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268,836 - 0.4
268,886 - 0.8
268,899 - 0.7
269,030 + 0.8
269,049 + 2.0
269,467 - 9801 mRNA_1433 0.16 1.2
269,629 + 9801 mRNA_1433 0.28 -1.9
269,773 - 9801 mRNA_1433 0.39 1.9
269,894 - 9801 mRNA_1433 0.48 0.2
270,162 - 9801 mRNA_1433 0.68 1.8
270,328 + 9801 mRNA_1433 0.81 0.8
270,330 - 9801 mRNA_1433 0.81 -0.1
270,333 + 9801 mRNA_1433 0.81 0.4
270,390 + 9801 mRNA_1433 0.85 -0.2
270,484 + -1.6
270,497 + -0.1
270,644 + 0.1
270,650 - -0.4
270,774 - 0.6
270,778 + -1.7
270,927 + -0.1
270,930 + -0.4
270,930 + 2.6
271,071 - -0.0
271,090 - 0.2
271,227 - -0.6