Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1431

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264327 to 265821 9798 mRNA_1431: 9799 - Hypothetical Protein, at 266080 to 266508 9799 mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267491 to 268796 9800

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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265,406 - 9798 mRNA_1430 0.72 2.3
265,563 - 9798 mRNA_1430 0.83 -0.1
265,684 - 0.6
265,722 - 0.9
265,847 - 2.5
265,876 + 0.2
265,889 - 0.1
265,890 - -0.1
265,894 + 0.5
265,914 + 1.1
266,018 - 1.4
266,036 - -0.6
266,188 + 9799 mRNA_1431 0.25 0.2
266,188 + 9799 mRNA_1431 0.25 -0.1
266,339 - 9799 mRNA_1431 0.60 -0.3
266,463 - 9799 mRNA_1431 0.89 0.0
266,464 + 9799 mRNA_1431 0.90 -0.5
266,471 - 0.4
266,501 - 0.1
266,506 + 2.1
266,616 + 2.0
266,621 + 0.8
266,634 + 1.2
266,693 - 0.8
266,759 - -0.5
266,760 - 1.3
266,913 - 0.3
266,919 + 0.1
266,927 - 1.2
266,936 - -1.2
267,050 - 0.0
267,052 - -0.0
267,065 + 1.1
267,091 + 1.1
267,091 + -0.4
267,095 + 0.9
267,095 + 1.8
267,103 + 0.9
267,116 + -0.2
267,241 + 1.5
267,251 + -2.0
267,264 + -0.1
267,267 + 0.9
267,274 - 0.2
267,281 + 0.1
267,282 + 0.3
267,388 - 0.2