Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1420

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229918 to 235537 9787 mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236131 to 238616 9788 mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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235,180 + -0.5
235,459 + 1.0
235,570 - 1.7
235,729 + -0.1
235,736 - 1.1
235,741 + 2.5
236,036 + 2.1
236,051 + 0.2
236,053 - 1.0
236,322 - 0.7
236,522 - 9788 mRNA_1420 0.16 2.1
236,825 + 9788 mRNA_1420 0.28 -0.4
236,942 + 9788 mRNA_1420 0.33 -0.1
237,319 + 9788 mRNA_1420 0.48 1.1
237,366 + 9788 mRNA_1420 0.50 0.8
237,501 + 9788 mRNA_1420 0.55 -0.3
237,504 - 9788 mRNA_1420 0.55 -0.4
237,520 + 9788 mRNA_1420 0.56 1.0
237,768 - 9788 mRNA_1420 0.66 -0.3
238,237 - 9788 mRNA_1420 0.85 -1.0
238,332 + 9788 mRNA_1420 0.89 0.5
238,630 + 0.5
238,779 + 0.2
238,902 - -0.2
238,908 - -0.1
238,921 - -0.2
239,066 - 0.3
239,073 + -0.1
239,084 - 1.5
239,209 - -0.2
239,214 - 0.3
239,233 + 2.7
239,358 + -0.2
239,427 - -0.6
239,429 - -0.4
239,458 + 0.8
239,469 + 2.1
239,503 + 2.4
239,535 + 0.6