Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1412

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1411: 9779 - Hypothetical Protein, at 205641 to 206403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206910 to 211871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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205,911 - 9779 mRNA_1411 0.35 0.1
206,008 - 9779 mRNA_1411 0.48 0.1
206,220 + 9779 mRNA_1411 0.76 -0.7
206,326 - 9779 mRNA_1411 0.90 1.8
206,327 - -0.5
206,353 + -1.7
206,458 - 0.0
206,471 + 2.0
206,608 - 0.5
206,633 + 1.2
206,803 - 1.3
206,968 + 0.1
207,082 - 0.5
207,516 + 9780 mRNA_1412 0.12 0.7
207,546 - 9780 mRNA_1412 0.13 0.8
207,549 + 9780 mRNA_1412 0.13 0.3
207,647 - 9780 mRNA_1412 0.15 0.7
207,843 - 9780 mRNA_1412 0.19 1.6
207,965 + 9780 mRNA_1412 0.21 1.1
207,973 - 9780 mRNA_1412 0.21 -2.0
207,987 + 9780 mRNA_1412 0.22 -0.0
208,099 - 9780 mRNA_1412 0.24 0.3
208,114 + 9780 mRNA_1412 0.24 -2.3
208,228 - 9780 mRNA_1412 0.27 -1.0
208,562 + 9780 mRNA_1412 0.33 -0.5
208,668 + 9780 mRNA_1412 0.35 0.9
208,688 + 9780 mRNA_1412 0.36 1.3
209,033 + 9780 mRNA_1412 0.43 -0.4
209,285 + 9780 mRNA_1412 0.48 0.7
209,321 - 9780 mRNA_1412 0.49 0.4
209,392 - 9780 mRNA_1412 0.50 1.3
209,400 + 9780 mRNA_1412 0.50 -0.1
209,599 + 9780 mRNA_1412 0.54 2.3
209,713 + 9780 mRNA_1412 0.56 0.4
209,762 + 9780 mRNA_1412 0.57 0.2
210,139 + 9780 mRNA_1412 0.65 2.0
210,892 - 9780 mRNA_1412 0.80 0.9
211,423 - 1.8
211,427 + -0.4
211,814 + 0.0
212,142 + 0.1
212,226 - -0.1
212,228 - -0.0
212,369 - 0.3
212,543 + -0.7
212,702 - 0.1
212,811 - 0.4