Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1403

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1402: 9770 - K06654 PHO80 phosphate system cyclin PHO80, at 185630 to 187322 9770 mRNA_1403: 9771 - K08190 SLC16A14 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14, at 187710 to 190029 9771 mRNA_1404: 9772 - KOG2504 Monocarboxylate transporter, at 190800 to 192983 9772

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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187,331 - 0.1
187,353 + 0.3
187,503 - -1.1
187,509 + -0.5
187,643 - 0.4
187,645 - 1.0
187,653 + -1.2
187,797 - 1.2
187,943 + 9771 mRNA_1403 0.10 -0.2
187,979 - 9771 mRNA_1403 0.12 1.4
188,086 + 9771 mRNA_1403 0.16 1.0
188,217 + 9771 mRNA_1403 0.22 2.5
188,239 + 9771 mRNA_1403 0.23 0.7
188,364 - 9771 mRNA_1403 0.28 -1.4
188,371 + 9771 mRNA_1403 0.28 -0.2
188,373 - 9771 mRNA_1403 0.29 1.8
188,508 + 9771 mRNA_1403 0.34 1.3
188,510 + 9771 mRNA_1403 0.34 -0.3
188,526 + 9771 mRNA_1403 0.35 -0.5
188,684 - 9771 mRNA_1403 0.42 1.8
188,807 - 9771 mRNA_1403 0.47 0.9
189,982 + 0.9
190,004 + 0.3
190,019 + -0.1
190,164 - -0.8
190,322 - -0.6
190,451 - -0.5
190,465 + 0.3
190,478 + 0.2
190,566 - 1.9
190,567 - 0.1
190,609 + -0.2
190,709 - 0.1
190,784 + 0.2
190,923 - -0.3