Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1352

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1351: 9719 - Hypothetical Protein, at 61226 to 65910 9719 mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720 mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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65,471 + 0.7
65,500 + 1.1
65,540 - -0.9
65,575 - -0.3
65,600 + -1.8
65,606 + 0.2
65,720 - 2.3
65,839 + 1.0
65,953 - 0.2
66,035 + -0.8
66,064 + 1.0
66,505 - 0.3
66,526 - -0.9
66,532 + 0.3
66,532 + -0.4
66,532 + 1.0
66,644 - 9720 mRNA_1352 0.27 -0.1
66,779 + 9720 mRNA_1352 0.49 0.0
66,783 - 9720 mRNA_1352 0.50 -0.7
66,874 - 9720 mRNA_1352 0.64 1.2
67,027 - 9720 mRNA_1352 0.88 2.0
67,035 + 9720 mRNA_1352 0.90 0.3
67,052 - -0.5
67,314 - 0.4
67,363 - 0.4
67,365 - 0.1
67,372 + -0.6
67,498 - -0.9
67,510 - 0.5
67,514 + 0.3
67,597 + -0.7
67,644 - 0.1
67,645 + 0.8
67,714 + 0.4
67,758 + 2.1
67,775 + -0.0
67,780 + 0.0
67,785 - -0.1
67,787 - 1.9
67,794 - 0.3
67,799 - 0.6
67,799 - 0.8
67,800 + 2.6
67,804 + -0.9
67,814 - 0.4
67,814 - 0.8
67,817 - -1.2
67,822 + 0.4
67,834 - 0.3
67,898 - 1.4
67,943 + 0.7
67,946 + 2.7
67,964 + 0.5
67,989 + -0.0
67,999 - 2.1