Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1316

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903446 to 907323 9683 mRNA_1316: 9684 - KOG4711 Predicted membrane protein, at 907427 to 911419 9684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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907,384 - -1.1
907,585 - -1.0
907,792 + -1.5
907,836 + 9684 mRNA_1316 0.10 2.1
908,327 - 9684 mRNA_1316 0.23 -0.2
908,382 + 9684 mRNA_1316 0.24 1.0
908,391 + 9684 mRNA_1316 0.24 0.5
908,413 + 9684 mRNA_1316 0.25 0.8
908,534 - 9684 mRNA_1316 0.28 1.0
908,564 + 9684 mRNA_1316 0.28 0.6
909,497 + 9684 mRNA_1316 0.52 0.7
909,498 - 9684 mRNA_1316 0.52 -0.6
909,530 - 9684 mRNA_1316 0.53 1.7
909,559 + 9684 mRNA_1316 0.53 2.0
909,917 - 9684 mRNA_1316 0.62 -0.1
909,943 - 9684 mRNA_1316 0.63 1.1
909,999 + 9684 mRNA_1316 0.64 0.4
910,082 + 9684 mRNA_1316 0.66 0.4
910,541 + 9684 mRNA_1316 0.78 0.5
910,564 - 9684 mRNA_1316 0.79 0.2
910,835 + 9684 mRNA_1316 0.85 -0.3
910,954 - 9684 mRNA_1316 0.88 1.8
911,155 - 0.4
911,576 + 0.6
911,714 + 0.5
911,718 - 0.2
911,719 + -0.7
911,857 + 0.8
911,868 - -0.9
911,997 + -0.2
912,000 - -0.9
912,000 - 0.5
912,007 + -0.0
912,009 - 2.3
912,010 - 2.5
912,015 - 0.9
912,020 + 1.4
912,022 - 0.0
912,023 + -0.5
912,024 + 1.4
912,027 + 0.5
912,033 - 0.2
912,034 + -0.3
912,039 + 1.6
912,053 + -0.3
912,099 - 0.5
912,103 - -0.1
912,105 - 0.4
912,106 + 0.2
912,109 + -0.4
912,111 + 0.0
912,111 - 1.7
912,113 + -0.6
912,115 - -0.9
912,116 - -0.1
912,117 - 0.8
912,118 - 1.6
912,120 - 0.4
912,121 - -0.1
912,123 + -1.1
912,123 - -0.4
912,123 + -0.4
912,123 + 0.1
912,124 - -1.1
912,124 - 1.0
912,125 - 2.2
912,125 - -0.1
912,125 - 0.3
912,125 + -0.4
912,126 + 2.3
912,129 - 0.2
912,129 - -0.6
912,129 - -1.3
912,133 + 3.6
912,136 + 0.5
912,138 - 1.1
912,139 - 1.3
912,140 - 0.6
912,145 - 0.7
912,154 + 1.6
912,161 - 0.2
912,167 + 0.9
912,168 - 1.6
912,175 + 0.6
912,304 + 0.5
912,401 + -0.5