Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1288

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1287: 9655 - KOG1087 Cytosolic sorting protein GGA2/TOM1, at 836321 to 838675 9655 mRNA_1288: 9656 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 839397 to 840221 9656 mRNA_1289: 9657 - K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2, at 840459 to 844214 9657

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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838,637 - 1.6
838,681 - 1.4
838,684 + -0.4
839,340 - 0.5
839,363 + 2.8
839,411 - -0.7
839,422 + 0.1
839,857 - 9656 mRNA_1288 0.56 -1.4
839,876 + 9656 mRNA_1288 0.58 -0.1
839,954 - 9656 mRNA_1288 0.68 0.3
839,984 + 9656 mRNA_1288 0.71 0.1
839,994 - 9656 mRNA_1288 0.72 1.2
840,006 + 9656 mRNA_1288 0.74 1.0
840,011 - 9656 mRNA_1288 0.74 1.2
840,138 - 9656 mRNA_1288 0.90 1.0
840,292 - 0.4
840,292 + -0.5
840,293 + -1.6
840,294 + -0.4
840,294 + -1.2
840,295 - 0.4
840,296 + 0.3
840,343 - 1.0
840,345 + -0.7
840,369 + 0.4
840,370 + 2.2
840,374 - 0.4
840,376 - 0.6
840,505 - 0.5
840,511 + 0.1
840,514 - 0.8
840,779 + -0.4
840,807 - -0.9
840,810 + -0.2
840,957 - 9657 mRNA_1289 0.13 -0.7
840,962 + 9657 mRNA_1289 0.13 -0.8