Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1273

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640 mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808747 to 810374 9641 mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810580 to 813182 9642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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807,864 + 9640 mRNA_1272 0.24 1.0
807,870 + 9640 mRNA_1272 0.24 0.4
807,997 + 9640 mRNA_1272 0.38 0.5
808,140 - 9640 mRNA_1272 0.53 1.0
808,400 - 9640 mRNA_1272 0.81 0.2
808,400 - 9640 mRNA_1272 0.81 -0.3
808,476 - 9640 mRNA_1272 0.89 0.4
808,566 - -0.1
808,910 + 9641 mRNA_1273 0.10 -0.6
809,289 - 9641 mRNA_1273 0.33 0.1
809,369 + 9641 mRNA_1273 0.38 0.3
809,488 - 9641 mRNA_1273 0.46 -0.6
809,571 - 9641 mRNA_1273 0.51 0.0
809,782 + 9641 mRNA_1273 0.64 1.9
810,331 - 0.2
810,350 + -0.1
810,351 - 1.5
810,480 + -0.3
810,515 + 1.1
810,798 - 1.9
810,820 - 1.1
810,918 + 9642 mRNA_1274 0.13 0.0
810,919 - 9642 mRNA_1274 0.13 -0.7
810,922 + 9642 mRNA_1274 0.13 0.5
811,122 - 9642 mRNA_1274 0.21 -0.1
811,129 + 9642 mRNA_1274 0.21 1.2
811,132 - 9642 mRNA_1274 0.21 1.3
811,202 + 9642 mRNA_1274 0.24 1.8
811,206 - 9642 mRNA_1274 0.24 0.0
811,250 - 9642 mRNA_1274 0.26 1.2