Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1271

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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802,423 + 9638 mRNA_1270 0.78 0.3
802,994 + -1.2
803,005 + 0.3
803,020 + 1.5
803,137 - 0.5
803,141 + 0.8
803,158 + 1.3
803,183 - 0.4
803,199 - 0.7
803,296 + -1.5
803,302 + 0.1
803,311 - 2.6
803,333 + -0.0
803,456 - 0.5
803,463 + -1.0
803,464 - 0.9
803,465 - -0.2
803,623 - 1.0
803,787 + 9639 mRNA_1271 0.11 -0.5
803,864 + 9639 mRNA_1271 0.13 0.1
803,894 - 9639 mRNA_1271 0.14 1.3
803,960 - 9639 mRNA_1271 0.16 0.7
804,009 - 9639 mRNA_1271 0.17 0.3
804,049 + 9639 mRNA_1271 0.18 -0.6
804,067 + 9639 mRNA_1271 0.19 0.6
804,188 + 9639 mRNA_1271 0.22 0.9
804,473 + 9639 mRNA_1271 0.30 2.0
804,613 + 9639 mRNA_1271 0.34 -0.0
804,616 - 9639 mRNA_1271 0.34 -0.8
804,762 - 9639 mRNA_1271 0.39 -0.7
804,794 - 9639 mRNA_1271 0.40 -1.7
804,864 + 9639 mRNA_1271 0.42 -0.8
804,979 - 9639 mRNA_1271 0.45 0.9
805,215 + 9639 mRNA_1271 0.52 2.4
805,246 + 9639 mRNA_1271 0.53 -0.9
805,488 + 9639 mRNA_1271 0.60 0.7
805,625 + 9639 mRNA_1271 0.64 0.4
805,652 + 9639 mRNA_1271 0.64 -0.3
805,802 + 9639 mRNA_1271 0.69 -0.4
805,805 - 9639 mRNA_1271 0.69 1.2
805,968 + 9639 mRNA_1271 0.73 -0.0
806,102 - 9639 mRNA_1271 0.77 0.3
806,252 - 9639 mRNA_1271 0.82 -0.4
806,327 + 9639 mRNA_1271 0.84 0.8
806,464 + 9639 mRNA_1271 0.88 0.3
806,547 - 0.9
806,674 + 2.6
806,676 - 1.0
806,830 + 0.6
807,271 + -0.7
807,273 - -0.2
807,294 - 0.4
807,296 - 1.6
807,300 + 0.5
807,300 + -0.0
807,388 + -0.2
807,399 + 0.5
807,412 - -0.3
807,425 + 0.1
807,545 - 0.8
807,663 + 0.6
807,706 - 0.4
807,714 - 1.7
807,864 + 9640 mRNA_1272 0.24 1.0
807,870 + 9640 mRNA_1272 0.24 0.4