Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1270

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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799,623 - 0.2
799,635 - 1.1
799,778 - 0.4
799,917 + 0.8
799,946 + 1.6
799,974 - 2.3
800,046 - 0.2
800,083 - 0.1
800,125 - 0.3
800,198 - -0.1
800,220 - -1.8
800,240 - 1.6
800,242 + 0.3
800,245 + 0.8
800,246 - -0.4
800,247 + -1.7
800,366 + 0.7
800,508 - 0.3
800,516 + 0.5
800,593 - 0.7
800,637 - -0.2
800,652 - -0.5
800,694 - -0.4
800,711 - 0.3
800,721 + 0.0
800,961 + 9638 mRNA_1270 0.16 -0.0
801,332 + 9638 mRNA_1270 0.32 2.2
801,398 + 9638 mRNA_1270 0.34 1.3
801,401 + 9638 mRNA_1270 0.34 0.4
801,411 - 9638 mRNA_1270 0.35 -1.6
801,669 - 9638 mRNA_1270 0.46 0.9
801,784 + 9638 mRNA_1270 0.51 -1.0
801,854 - 9638 mRNA_1270 0.54 -1.7
802,273 + 9638 mRNA_1270 0.72 -0.9
802,283 + 9638 mRNA_1270 0.72 -1.9
802,423 + 9638 mRNA_1270 0.78 0.3
802,994 + -1.2
803,005 + 0.3
803,020 + 1.5
803,137 - 0.5
803,141 + 0.8
803,158 + 1.3
803,183 - 0.4
803,199 - 0.7
803,296 + -1.5
803,302 + 0.1
803,311 - 2.6
803,333 + -0.0
803,456 - 0.5
803,463 + -1.0
803,464 - 0.9
803,465 - -0.2
803,623 - 1.0
803,787 + 9639 mRNA_1271 0.11 -0.5
803,864 + 9639 mRNA_1271 0.13 0.1
803,894 - 9639 mRNA_1271 0.14 1.3