Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1267

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791102 to 792635 9634 mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793138 to 795041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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792,352 - 9634 mRNA_1266 0.81 1.5
792,640 + -0.5
792,755 - -1.1
792,761 - 2.7
792,762 - -0.9
792,789 - -0.5
792,789 + 1.6
792,808 - -1.7
792,844 + 1.2
792,846 + -0.6
792,846 + 0.7
792,910 + 0.5
792,943 - 0.2
792,997 + -0.9
793,028 - 0.7
793,032 - -0.1
793,055 - 1.3
793,058 - -0.2
793,065 + 1.7
793,072 - 1.0
793,075 - 1.3
793,084 + -0.7
793,165 + 0.3
793,167 - -0.4
793,218 + -0.2
793,223 - 0.4
793,351 - 9635 mRNA_1267 0.11 0.1
793,354 + 9635 mRNA_1267 0.11 -0.1
793,370 - 9635 mRNA_1267 0.12 -0.2
793,373 + 9635 mRNA_1267 0.12 0.0
793,500 - 9635 mRNA_1267 0.19 1.5
793,507 + 9635 mRNA_1267 0.19 0.7
793,521 - 9635 mRNA_1267 0.20 0.9
793,649 - 9635 mRNA_1267 0.27 -1.1
794,072 - 9635 mRNA_1267 0.49 -0.3
794,239 + 9635 mRNA_1267 0.58 -0.4
794,346 + 9635 mRNA_1267 0.63 0.5
794,379 - 9635 mRNA_1267 0.65 1.0
794,503 + 9635 mRNA_1267 0.72 0.3
794,534 + 9635 mRNA_1267 0.73 -0.1
794,652 - 9635 mRNA_1267 0.80 0.8
794,860 + -0.7
795,071 + 2.5
795,075 + -0.1
795,102 + 0.5
795,113 + -1.1
795,122 - 0.6
795,130 + -1.1
795,131 - -0.1
795,144 - 0.2
795,229 + 0.2
795,232 - -0.3
795,257 - -0.9
795,274 + -0.1
795,332 - -0.6
795,351 + 1.2
795,446 - 0.1
795,467 + 0.7
795,563 - 9636 mRNA_1268 0.17 1.6
795,874 - 9636 mRNA_1268 0.52 1.4
795,916 - 9636 mRNA_1268 0.57 0.8
795,984 + 9636 mRNA_1268 0.64 1.4
796,039 + 9636 mRNA_1268 0.70 -0.8