Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1249

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747049 to 750301 9616 mRNA_1249: 9617 - Hypothetical Protein, at 750828 to 752844 9617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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749,881 + 9616 mRNA_1248 0.87 2.3
749,913 - 9616 mRNA_1248 0.88 -1.1
749,932 - 9616 mRNA_1248 0.89 0.0
749,933 + 9616 mRNA_1248 0.89 1.9
750,023 - -0.4
750,056 - 0.8
750,125 - -1.3
750,154 - -1.1
750,158 - 0.4
750,184 - -0.3
750,204 - -0.3
750,213 - -0.7
750,217 - 0.2
750,220 + 1.7
750,226 - 0.1
750,328 - 0.3
750,469 + 0.3
750,496 - -0.1
750,506 + -0.1
750,559 + 0.1
750,570 + 1.1
750,660 + -0.3
750,690 + 1.7
750,824 + 0.1
750,838 - -2.4
751,275 + 9617 mRNA_1249 0.22 0.2
751,532 + 9617 mRNA_1249 0.35 0.3
751,536 - 9617 mRNA_1249 0.35 -0.5
751,690 + 9617 mRNA_1249 0.43 0.2
752,394 + 9617 mRNA_1249 0.78 1.1
752,519 + 9617 mRNA_1249 0.84 -1.3
752,531 + 9617 mRNA_1249 0.84 0.5
752,668 + 0.2
752,732 + 0.9
752,837 - 0.1
752,844 + -0.2
752,851 - 0.0
752,973 - 0.2
752,973 - -0.5
752,977 + 0.9
752,984 + 2.0
753,002 + 1.7
753,114 - 0.9
753,115 - -0.5
753,117 - -0.1
753,122 - -0.3
753,122 - 0.5
753,126 + 1.8
753,138 - 2.8
753,138 - 1.1
753,145 - 0.5
753,150 - 1.3
753,264 + -0.3
753,269 + 0.5
753,393 + 0.3
753,406 - -0.8
753,416 + 0.4
753,426 + 0.6
753,438 + 0.7
753,450 + 2.3
753,719 - 0.2