Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1239

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726176 to 728961 9606 mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729414 to 732263 9607 mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732640 to 733855 9608

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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728,517 + 9606 mRNA_1238 0.84 -0.2
728,618 - 9606 mRNA_1238 0.88 0.5
728,645 - 9606 mRNA_1238 0.89 -0.8
728,645 + 9606 mRNA_1238 0.89 0.3
728,807 + 0.4
729,355 - 1.1
729,365 - 0.3
729,370 - 0.8
729,387 + 0.3
729,815 - 9607 mRNA_1239 0.14 -0.1
729,819 - 9607 mRNA_1239 0.14 -0.1
729,832 + 9607 mRNA_1239 0.15 1.3
729,989 - 9607 mRNA_1239 0.20 -0.4
730,100 - 9607 mRNA_1239 0.24 2.9
730,426 - 9607 mRNA_1239 0.36 -0.2
730,681 - 9607 mRNA_1239 0.44 -0.5
730,834 - 9607 mRNA_1239 0.50 0.7
730,845 - 9607 mRNA_1239 0.50 1.0
731,174 + 9607 mRNA_1239 0.62 0.9
731,174 + 9607 mRNA_1239 0.62 -1.4
731,309 + 9607 mRNA_1239 0.66 -0.7
731,796 + 9607 mRNA_1239 0.84 1.3
732,129 + -1.5
732,174 + 0.2
732,423 + -0.2
732,424 + 0.0
732,470 + 0.6
732,622 - -1.3
732,747 - -0.6
732,749 - 1.6
732,757 + -1.0
732,761 + 1.8
732,785 - 9608 mRNA_1240 0.12 1.4
732,787 + 9608 mRNA_1240 0.12 0.2
733,079 + 9608 mRNA_1240 0.36 -1.1