Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1235

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1234: 9602 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 714659 to 715622 9602 mRNA_1235: 9603 - K12818 DHX8, PRP22 ATP-dependent RNA helicase DHX8/PRP22, at 716185 to 721769 9603 mRNA_1236: 9604 - K02377 TSTA3, fcl GDP-L-fucose synthase, at 722261 to 724161 9604

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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715,254 - 9602 mRNA_1234 0.62 3.4
715,486 - 9602 mRNA_1234 0.86 -0.5
715,639 - 1.0
715,734 + -0.2
715,921 - 0.2
715,929 - -0.5
716,273 + -0.6
716,350 + 1.2
716,364 - -0.5
716,420 - 1.5
716,421 + -0.4
716,527 - 0.6
716,659 - 1.9
716,673 - -0.6
716,782 + 9603 mRNA_1235 0.11 -0.3
716,805 + 9603 mRNA_1235 0.11 0.5
716,824 - 9603 mRNA_1235 0.11 1.9
716,972 - 9603 mRNA_1235 0.14 0.9
717,110 + 9603 mRNA_1235 0.17 0.2
721,900 - 0.1
722,058 + -0.4
722,097 - 0.6
722,114 - 0.6
722,169 - 0.4
722,176 - 1.3
722,177 - -0.2
722,179 - -0.5
722,179 - 1.6
722,180 + -0.2
722,194 + 0.4
722,199 - 0.6
722,201 + 1.7
722,211 - 1.9
722,216 - 0.7
722,680 - 9604 mRNA_1236 0.22 0.1