Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1226

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691442 to 693362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594 mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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693,224 + -0.5
693,390 + 1.5
693,395 - 0.4
693,521 - 0.7
693,523 + 0.3
693,587 + -0.1
693,710 + 1.7
693,815 - 0.4
694,254 - 9594 mRNA_1226 0.19 2.2
694,281 + 9594 mRNA_1226 0.20 -0.3
694,346 + 9594 mRNA_1226 0.23 0.4
694,829 - 9594 mRNA_1226 0.43 -1.8
694,889 + 9594 mRNA_1226 0.45 2.3
695,421 - 9594 mRNA_1226 0.67 0.3
695,730 - 9594 mRNA_1226 0.79 0.1
696,201 - -1.4
696,304 + -0.7
696,348 - -1.4
696,602 - 0.6
696,809 + 2.4
696,818 - 0.6
696,940 - 9595 mRNA_1227 0.13 1.2
696,948 + 9595 mRNA_1227 0.13 0.9
696,965 + 9595 mRNA_1227 0.14 -0.3
697,024 - 9595 mRNA_1227 0.16 0.0