Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1205

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1204: 9572 - K11253 H3 histone H3, at 644516 to 645336 9572 mRNA_1205: 9573 - Hypothetical Protein, at 645858 to 646499 9573 mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646745 to 651192 9574

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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644,878 - 9572 mRNA_1204 0.44 -1.4
644,901 + 9572 mRNA_1204 0.47 0.9
645,188 - 9572 mRNA_1204 0.82 -0.3
645,466 + -0.5
645,486 + 1.4
645,597 - 0.8
645,601 - -1.2
645,608 + -1.1
645,614 + -0.5
645,615 - 0.7
645,667 + 2.9
645,667 - 0.4
645,677 - 2.6
645,693 - 0.7
645,706 - 1.0
645,707 + -0.1
645,707 + 0.1
645,710 - 3.0
645,717 + -0.1
645,717 - -0.1
645,719 - -0.0
645,747 + 1.2
645,751 - -0.1
645,763 - 1.7
645,846 + 1.5
645,862 - -0.4
645,870 - -0.3
646,165 - 9573 mRNA_1205 0.48 0.6
646,195 - 9573 mRNA_1205 0.52 0.2
646,329 - 9573 mRNA_1205 0.73 0.7
646,356 - 9573 mRNA_1205 0.78 2.4
646,358 + 9573 mRNA_1205 0.78 1.7
646,370 - 9573 mRNA_1205 0.80 0.4
646,375 - 9573 mRNA_1205 0.81 2.6
646,480 - 0.2
646,494 - -0.8
646,494 - 0.4
646,502 + 2.2
646,503 - -0.0
646,504 + -0.3
646,505 - -1.0
646,514 + -0.1
646,518 - 0.1
646,526 + 1.4
646,610 + -1.3
646,660 - -0.2