Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1185

Experiments: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603862 to 607168 9554

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
600,433 + 9552 mRNA_1184 0.67 -0.2
600,561 - 9552 mRNA_1184 0.75 -0.5
600,741 - 9552 mRNA_1184 0.86 -0.4
600,893 + -0.8
601,052 - -0.5
601,147 - 1.8
601,176 + 0.5
601,177 + 3.1
601,186 + 2.4
601,197 - -0.4
601,204 + -0.1
601,205 + -0.4
601,211 - 1.5
601,217 - 0.0
601,359 + -0.1
601,502 - 0.9
601,519 + -0.8
601,610 - -0.9
601,705 - 9553 mRNA_1185 0.13 1.3
601,792 + 9553 mRNA_1185 0.16 0.0
601,840 + 9553 mRNA_1185 0.18 -0.4
601,917 - 9553 mRNA_1185 0.22 0.2
602,125 + 9553 mRNA_1185 0.31 1.6
602,184 - 9553 mRNA_1185 0.33 0.7
602,221 - 9553 mRNA_1185 0.35 -0.2
602,226 - 9553 mRNA_1185 0.35 0.3
602,531 - 9553 mRNA_1185 0.48 -1.4
602,718 + 9553 mRNA_1185 0.56 0.9
602,908 + 9553 mRNA_1185 0.64 -2.1
602,911 - 9553 mRNA_1185 0.64 -0.9
602,920 - 9553 mRNA_1185 0.64 0.5
602,979 - 9553 mRNA_1185 0.67 0.6
602,989 + 9553 mRNA_1185 0.67 0.4
603,066 + 9553 mRNA_1185 0.70 -0.1
603,262 - 9553 mRNA_1185 0.79 1.0
603,282 - 9553 mRNA_1185 0.80 -0.3
603,283 - 9553 mRNA_1185 0.80 0.6
603,283 - 9553 mRNA_1185 0.80 0.5
603,304 + 9553 mRNA_1185 0.80 0.6
603,414 - 9553 mRNA_1185 0.85 -0.2
603,426 - 9553 mRNA_1185 0.86 1.3
603,526 - 9553 mRNA_1185 0.90 -0.2
603,565 - 0.3
603,697 - 0.4
603,752 + 0.2
604,074 + 0.7
604,101 - 0.9
604,351 + 9554 mRNA_1186 0.15 -0.4
604,465 - 9554 mRNA_1186 0.18 -0.3