Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1184

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596710 to 598781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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598,381 + 9551 mRNA_1183 0.81 1.1
598,422 + 9551 mRNA_1183 0.83 0.2
598,658 - 1.1
598,663 + 0.9
598,679 - 0.5
598,705 + 1.1
598,802 - -0.8
598,831 + 2.4
598,963 - -0.9
598,965 - 0.3
598,969 - 0.2
598,970 + -0.3
598,978 + 0.2
598,983 + -0.4
598,985 + -0.1
599,000 - -0.3
599,002 - 0.2
599,004 - 2.2
599,012 + 0.0
599,149 - -0.1
599,181 + 0.5
599,295 + 0.0
599,298 - -0.0
599,299 - 0.3
599,314 + -0.8
599,410 + -1.1
599,455 - -0.3
599,997 + 9552 mRNA_1184 0.40 -0.2
600,037 + 9552 mRNA_1184 0.43 1.9
600,069 - 9552 mRNA_1184 0.45 0.1
600,078 + 9552 mRNA_1184 0.45 1.1
600,145 - 9552 mRNA_1184 0.49 1.9
600,280 - 9552 mRNA_1184 0.58 -0.0
600,348 - 9552 mRNA_1184 0.62 1.3
600,433 + 9552 mRNA_1184 0.67 -0.2
600,561 - 9552 mRNA_1184 0.75 -0.5
600,741 - 9552 mRNA_1184 0.86 -0.4
600,893 + -0.8
601,052 - -0.5
601,147 - 1.8
601,176 + 0.5
601,177 + 3.1
601,186 + 2.4
601,197 - -0.4
601,204 + -0.1
601,205 + -0.4
601,211 - 1.5
601,217 - 0.0
601,359 + -0.1
601,502 - 0.9
601,519 + -0.8
601,610 - -0.9
601,705 - 9553 mRNA_1185 0.13 1.3
601,792 + 9553 mRNA_1185 0.16 0.0
601,840 + 9553 mRNA_1185 0.18 -0.4
601,917 - 9553 mRNA_1185 0.22 0.2