Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1183

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593740 to 596442 9550 mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596710 to 598781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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596,527 - 1.9
596,543 - -1.4
596,559 + -0.3
596,559 + 0.9
596,578 - -0.2
596,579 - 0.3
596,596 + 0.6
596,885 - -0.4
596,903 + -0.4
596,904 + 0.3
597,192 - 9551 mRNA_1183 0.23 -0.9
597,228 - 9551 mRNA_1183 0.25 -1.1
597,318 - 9551 mRNA_1183 0.29 0.6
597,387 - 9551 mRNA_1183 0.33 0.3
597,411 + 9551 mRNA_1183 0.34 0.1
597,431 - 9551 mRNA_1183 0.35 -0.2
597,655 - 9551 mRNA_1183 0.46 -1.2
597,676 + 9551 mRNA_1183 0.47 -0.8
597,682 + 9551 mRNA_1183 0.47 -1.2
598,060 + 9551 mRNA_1183 0.65 -0.2
598,068 - 9551 mRNA_1183 0.66 1.4
598,184 + 9551 mRNA_1183 0.71 -0.3
598,284 - 9551 mRNA_1183 0.76 1.3
598,381 + 9551 mRNA_1183 0.81 1.1
598,422 + 9551 mRNA_1183 0.83 0.2
598,658 - 1.1
598,663 + 0.9
598,679 - 0.5
598,705 + 1.1
598,802 - -0.8
598,831 + 2.4
598,963 - -0.9
598,965 - 0.3
598,969 - 0.2
598,970 + -0.3
598,978 + 0.2
598,983 + -0.4
598,985 + -0.1
599,000 - -0.3
599,002 - 0.2
599,004 - 2.2
599,012 + 0.0
599,149 - -0.1
599,181 + 0.5
599,295 + 0.0
599,298 - -0.0
599,299 - 0.3
599,314 + -0.8
599,410 + -1.1
599,455 - -0.3