Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1174

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1173: 9541 - Hypothetical Protein, at 574105 to 575221 9541 mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575723 to 577057 9542 mRNA_1175: 9543 - Hypothetical Protein, at 577542 to 578636 9543

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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574,816 + 9541 mRNA_1173 0.64 0.3
574,822 + 9541 mRNA_1173 0.64 0.1
574,822 + 9541 mRNA_1173 0.64 -1.8
574,834 + 9541 mRNA_1173 0.65 0.2
574,854 - 9541 mRNA_1173 0.67 -0.5
574,956 - 9541 mRNA_1173 0.76 -0.8
575,087 + 9541 mRNA_1173 0.88 -0.3
575,153 - 1.7
575,203 + 1.1
575,221 + -0.2
575,245 + 0.7
575,388 + 1.4
575,403 + 1.9
575,546 + 0.3
575,673 + 0.7
575,685 - 0.2
575,685 - 0.8
575,688 + 0.2
575,805 - -0.8
575,824 + -0.2
575,967 + 9542 mRNA_1174 0.18 0.3
575,973 - 9542 mRNA_1174 0.19 -0.1
576,172 - 9542 mRNA_1174 0.34 0.7
576,184 + 9542 mRNA_1174 0.35 0.5
576,269 - 9542 mRNA_1174 0.41 0.4
576,424 - 9542 mRNA_1174 0.53 0.1
576,542 - 9542 mRNA_1174 0.61 0.1
576,548 + 9542 mRNA_1174 0.62 -0.2
576,571 + 9542 mRNA_1174 0.64 -0.0
576,600 - 9542 mRNA_1174 0.66 0.8
576,649 - 9542 mRNA_1174 0.69 0.4
576,688 - 9542 mRNA_1174 0.72 1.1
576,742 - 9542 mRNA_1174 0.76 -0.6
576,745 - 9542 mRNA_1174 0.77 0.6
576,857 + 9542 mRNA_1174 0.85 -1.1
576,979 + 0.1
576,984 + -0.2
577,026 + 0.5
577,118 - -0.2
577,139 - 0.0
577,610 + -1.4
577,639 + -0.5
577,824 - 9543 mRNA_1175 0.26 -0.2
577,854 + 9543 mRNA_1175 0.28 -0.9
577,881 - 9543 mRNA_1175 0.31 0.3
577,991 + 9543 mRNA_1175 0.41 0.1