Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1118

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443661 to 444962 9485 mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445419 to 446946 9486 mRNA_1119: 9487 - Hypothetical Protein, at 447624 to 448229 9487

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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444,967 + 1.6
444,971 - 1.0
445,170 - 0.3
445,175 - 0.7
445,307 - -0.0
445,457 + -0.5
446,055 + 9486 mRNA_1118 0.42 0.4
446,204 + 9486 mRNA_1118 0.51 0.6
446,221 - 9486 mRNA_1118 0.52 0.2
446,448 + 9486 mRNA_1118 0.67 0.8
446,640 + 9486 mRNA_1118 0.80 -0.6
446,653 + 9486 mRNA_1118 0.81 -0.6
446,805 - 0.2
446,859 - -1.7
446,875 + -0.0
446,876 - -0.2
446,903 + 0.3
446,921 + 0.8
446,922 + -0.1
446,941 - 0.8
447,029 + 0.5
447,044 + 0.2
447,084 - -0.1
447,090 - 0.2
447,116 - 0.4
447,117 + 2.8
447,134 - 1.8
447,150 + 0.3
447,167 - -1.6
447,196 - 0.5
447,198 - 0.2
447,200 + -0.9
447,204 - -0.0
447,214 + 0.2
447,232 + -1.3
447,237 - 2.9
447,237 - -0.2
447,237 - 0.3
447,238 - -0.4
447,238 - 1.3
447,240 + 0.4
447,242 - -0.8
447,242 - -0.2
447,242 + 1.3
447,242 - 0.8
447,244 - -0.8
447,255 - -0.9
447,270 + 1.7
447,270 + 0.7
447,273 + 0.7
447,280 - -2.3
447,282 + -0.6
447,286 - 0.1
447,289 - 0.3
447,306 - 1.1
447,307 - -0.4
447,321 + -0.6
447,321 + 0.4
447,321 + -1.5
447,322 - -0.8
447,328 - -0.2
447,345 + 1.5
447,421 + 0.7
447,424 + -0.1
447,437 - 0.6
447,447 + -0.3
447,578 - 2.3
447,580 + 0.8
447,608 + 0.5
447,715 + 9487 mRNA_1119 0.15 -0.2
447,835 + 9487 mRNA_1119 0.35 -0.5
447,872 + 9487 mRNA_1119 0.41 -2.2
447,914 + 9487 mRNA_1119 0.48 0.2