Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1101

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1100: 9468 - K14679 TRL1 tRNA ligase, at 402585 to 405523 9468 mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405793 to 407272 9469 mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407441 to 409508 9470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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405,594 - 1.2
405,620 - -0.3
405,685 - 2.1
405,686 - 2.6
405,686 + 1.3
405,689 + 1.0
405,691 - 0.4
405,693 + 2.6
405,693 - 1.2
405,699 + 1.1
405,705 - 1.1
405,710 + -0.0
405,711 - -0.6
405,720 + 0.7
405,720 + 1.3
405,733 + -0.3
405,809 - 2.0
405,815 + -0.5
405,841 - 0.6
405,866 + -0.1
405,868 + -2.0
405,869 - -0.3
405,990 - 9469 mRNA_1101 0.13 -0.8
405,991 - 9469 mRNA_1101 0.13 1.4
406,006 + 9469 mRNA_1101 0.14 -0.4
406,131 + 9469 mRNA_1101 0.23 -1.2
406,162 - 9469 mRNA_1101 0.25 -3.0
406,279 + 9469 mRNA_1101 0.33 0.1
406,282 - 9469 mRNA_1101 0.33 1.3
406,466 - 9469 mRNA_1101 0.45 0.5
406,488 + 9469 mRNA_1101 0.47 -3.3
406,936 - 9469 mRNA_1101 0.77 0.1
406,937 - 9469 mRNA_1101 0.77 -0.2
407,066 + 9469 mRNA_1101 0.86 0.7
407,133 - 1.7
407,177 - -0.2
407,195 + 1.5
407,328 - 0.7
407,785 - 9470 mRNA_1102 0.17 -0.6
407,893 + 9470 mRNA_1102 0.22 -0.2
407,968 + 9470 mRNA_1102 0.25 -0.6
408,058 + 9470 mRNA_1102 0.30 1.0
408,064 + 9470 mRNA_1102 0.30 -0.1