Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1074

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1073: 9441 - Hypothetical Protein, at 343845 to 345302 9441 mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442 mRNA_1075: 9443 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 347170 to 348411 9443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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345,162 - 1.7
345,166 + -0.7
345,257 - 0.7
345,455 - -0.6
345,461 + 0.9
345,640 - 1.0
345,646 + -0.6
345,931 + 1.6
345,934 - -0.7
346,283 - 9442 mRNA_1074 0.23 2.4
346,320 - 9442 mRNA_1074 0.27 0.6
346,326 + 9442 mRNA_1074 0.28 -0.1
346,327 - 9442 mRNA_1074 0.28 0.2
346,496 + 9442 mRNA_1074 0.47 2.3
346,944 + 0.6
346,944 + -0.4
347,065 - -1.3
347,092 + 0.3
347,100 - 0.7
347,206 - 0.6
347,213 + 0.3
347,229 + -0.1
347,238 + -0.5
347,242 + -0.4
347,243 - -0.7
347,247 + 0.7
347,247 + -0.2
347,247 - 0.1
347,248 - 0.3
347,271 + 1.5
347,418 - 9443 mRNA_1075 0.20 0.5
347,527 - 9443 mRNA_1075 0.29 0.1
347,570 - 9443 mRNA_1075 0.32 -0.6
347,683 - 9443 mRNA_1075 0.41 0.2
347,694 - 9443 mRNA_1075 0.42 0.2
347,980 - 9443 mRNA_1075 0.65 0.8