Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1073

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1072: 9440 - Hypothetical Protein, at 341677 to 343060 9440 mRNA_1073: 9441 - Hypothetical Protein, at 343845 to 345302 9441 mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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342,897 - 9440 mRNA_1072 0.88 -0.4
342,924 - -1.5
342,941 - -0.4
343,054 - -0.6
343,085 - 0.4
343,097 - 0.5
343,117 + 0.7
343,120 - -0.5
343,145 + 0.8
343,226 - 2.5
343,243 - -1.1
343,244 - -2.4
343,245 - 0.3
343,253 + 0.9
343,261 - 0.3
343,264 + 0.1
343,273 + 0.1
343,291 - 0.0
343,300 + 0.0
343,326 - -0.2
343,345 - -0.6
343,346 + 0.7
343,375 - 1.0
343,424 - -0.8
343,424 + 0.6
343,451 + 0.8
343,566 + -1.4
343,584 - -0.4
343,693 + 0.1
344,009 + 9441 mRNA_1073 0.11 0.5
344,250 - 9441 mRNA_1073 0.28 -0.2
344,271 + 9441 mRNA_1073 0.29 -1.2
344,542 - 9441 mRNA_1073 0.48 0.5
344,723 - 9441 mRNA_1073 0.60 0.6
344,837 - 9441 mRNA_1073 0.68 0.5
344,951 + 9441 mRNA_1073 0.76 -0.7
345,059 + 9441 mRNA_1073 0.83 1.0
345,162 - 1.7
345,166 + -0.7
345,257 - 0.7
345,455 - -0.6
345,461 + 0.9
345,640 - 1.0
345,646 + -0.6
345,931 + 1.6
345,934 - -0.7
346,283 - 9442 mRNA_1074 0.23 2.4