Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1066

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1065: 9433 - Hypothetical Protein, at 318251 to 319455 9433 mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320131 to 322252 9434 mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323098 to 325825 9435

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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319,586 + 1.3
319,669 - 0.5
319,690 + 0.3
319,691 + 0.3
319,744 + 1.5
319,766 - -1.1
319,783 + -0.1
319,802 + 0.8
319,836 - -0.6
319,853 - 2.4
319,859 + 0.5
319,866 - 0.2
319,868 - -1.0
319,953 + 0.0
320,120 - 0.0
320,239 - -0.2
320,249 - -0.4
320,273 + -0.3
320,303 + 2.2
320,381 + 9434 mRNA_1066 0.12 0.9
320,387 + 9434 mRNA_1066 0.12 -0.6
320,445 - 9434 mRNA_1066 0.15 1.7
320,445 + 9434 mRNA_1066 0.15 0.1
320,504 + 9434 mRNA_1066 0.18 0.8
320,508 - 9434 mRNA_1066 0.18 1.8
320,669 + 9434 mRNA_1066 0.25 -1.5
321,129 + 9434 mRNA_1066 0.47 0.2
321,162 - 9434 mRNA_1066 0.49 0.8
321,202 + 9434 mRNA_1066 0.50 -0.1
321,285 - 9434 mRNA_1066 0.54 1.0
321,292 + 9434 mRNA_1066 0.55 1.5
321,292 + 9434 mRNA_1066 0.55 -1.0
321,316 + 9434 mRNA_1066 0.56 2.3
321,434 + 9434 mRNA_1066 0.61 1.1
321,493 - 9434 mRNA_1066 0.64 2.1
321,629 - 9434 mRNA_1066 0.71 -0.3
321,656 - 9434 mRNA_1066 0.72 0.4
321,750 - 9434 mRNA_1066 0.76 -1.0
321,758 - 9434 mRNA_1066 0.77 0.6
321,936 + 9434 mRNA_1066 0.85 -0.1
322,024 - 9434 mRNA_1066 0.89 0.4
322,053 - -0.6
322,177 + -0.4
322,239 - 0.5
322,253 + -0.0
322,531 + 0.3
322,591 - -0.5
322,695 - 0.6
322,837 + -1.2
322,961 + 0.8
323,113 + -0.4