Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1063

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315591 to 316093 9431 mRNA_1064: 9432 - K05533 ANP1 mannan polymerase II complex ANP1 subunit, at 316506 to 317869 9432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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314,610 + 0.9
314,611 - 2.0
314,716 + 0.7
314,833 + -0.6
314,883 - 0.3
314,890 + 0.2
315,026 + 0.1
315,036 + 0.9
315,120 + 0.1
315,148 + 2.1
315,255 - 1.6
315,290 - 2.1
315,416 + -0.8
315,448 + -0.6
315,557 + -0.0
315,702 - 9431 mRNA_1063 0.22 0.2
315,705 + 9431 mRNA_1063 0.23 -0.3
315,855 - 9431 mRNA_1063 0.52 -2.5
315,881 + 9431 mRNA_1063 0.58 0.1
316,015 + 9431 mRNA_1063 0.84 0.9
316,018 - 9431 mRNA_1063 0.85 1.0
316,031 + 9431 mRNA_1063 0.87 -0.9
316,063 + 0.3
316,065 - 0.3
316,177 - 0.0
316,201 - 0.2
316,237 + 0.8
316,354 - 2.3
316,362 + -0.0
316,480 - 0.7
316,509 + -1.0
316,632 - -0.3
316,795 + 9432 mRNA_1064 0.21 0.4