Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1061

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301806 to 307768 9428 mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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307,550 - -0.7
307,837 - -1.0
307,850 + -0.5
307,861 - 0.2
307,965 - -0.2
308,021 - -1.0
308,152 - -0.1
308,283 + 0.3
308,334 + 1.1
308,619 - -0.9
309,107 + 9429 mRNA_1061 0.22 -0.1
309,165 - 9429 mRNA_1061 0.24 -1.1
309,437 - 9429 mRNA_1061 0.34 1.9
309,475 + 9429 mRNA_1061 0.35 -0.4
309,718 + 9429 mRNA_1061 0.44 0.4
310,172 - 9429 mRNA_1061 0.60 -0.5
310,215 - 9429 mRNA_1061 0.62 0.5
310,271 - 9429 mRNA_1061 0.64 0.6
310,317 + 9429 mRNA_1061 0.65 0.0
310,578 - 9429 mRNA_1061 0.75 -0.5
310,646 - 9429 mRNA_1061 0.77 0.4
310,646 - 9429 mRNA_1061 0.77 -3.6
310,665 + 9429 mRNA_1061 0.78 1.1
310,707 - 9429 mRNA_1061 0.79 -1.4
310,752 - 9429 mRNA_1061 0.81 -1.1
310,755 - 9429 mRNA_1061 0.81 1.7
310,758 + 9429 mRNA_1061 0.81 1.1
310,767 + 9429 mRNA_1061 0.81 -0.0
310,971 + 9429 mRNA_1061 0.89 -0.0
311,062 + -0.1
311,217 + -0.2
311,349 + 1.8
311,349 - -1.0
311,372 + 0.0
311,393 + 0.2
311,905 - 9430 mRNA_1062 0.15 1.5