Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1059

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298923 to 300090 9426 mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300871 to 301562 9427 mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301806 to 307768 9428

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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299,927 - 9426 mRNA_1058 0.86 1.1
299,927 - 9426 mRNA_1058 0.86 0.2
300,002 + 0.3
300,087 - 1.6
300,088 + 1.7
300,097 + -0.7
300,104 - 0.8
300,110 - -0.4
300,114 - 0.3
300,125 + -1.1
300,126 + -0.2
300,286 + -0.2
300,699 - -0.2
300,705 - 0.3
300,955 - 9427 mRNA_1059 0.12 0.7
300,969 - 9427 mRNA_1059 0.14 -1.1
300,971 + 9427 mRNA_1059 0.14 0.0
301,129 - 9427 mRNA_1059 0.37 -0.2
301,132 + 9427 mRNA_1059 0.38 -0.1
301,542 + 0.2
301,545 - 1.3
301,559 - 0.6
301,566 + 0.4
301,566 + -0.7
301,566 + 1.7
301,574 + 2.0
301,582 + 2.7
301,582 + 0.6
301,582 + 2.9
301,582 + 0.7
301,585 + -0.1
301,587 + -0.1
301,589 - -0.0
301,737 - 0.6
301,821 - 0.7
302,015 + 1.1
302,097 - -0.2
302,146 - -0.8
302,152 + -1.1
302,221 - -0.6
302,479 + 9428 mRNA_1060 0.11 -0.3
302,506 - 9428 mRNA_1060 0.12 -0.4
302,510 + 9428 mRNA_1060 0.12 0.1
302,554 + 9428 mRNA_1060 0.13 0.4