Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_973

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_972: 9340 - Hypothetical Protein, at 107840 to 108806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109023 to 112852 9341 mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113366 to 114313 9342

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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108,046 + 9340 mRNA_972 0.21 0.7
108,065 + 9340 mRNA_972 0.23 1.8
108,071 - 9340 mRNA_972 0.24 0.4
108,084 + 9340 mRNA_972 0.25 1.7
108,089 + 9340 mRNA_972 0.26 -0.5
108,099 - 9340 mRNA_972 0.27 0.2
108,114 + 9340 mRNA_972 0.28 0.6
108,117 - 9340 mRNA_972 0.29 1.6
108,127 - 9340 mRNA_972 0.30 0.5
108,128 - 9340 mRNA_972 0.30 1.1
108,131 + 9340 mRNA_972 0.30 -0.1
108,131 + 9340 mRNA_972 0.30 1.5
108,139 - 9340 mRNA_972 0.31 -0.1
108,145 + 9340 mRNA_972 0.32 0.0
108,147 - 9340 mRNA_972 0.32 0.0
108,166 + 9340 mRNA_972 0.34 -0.1
108,169 + 9340 mRNA_972 0.34 0.3
108,192 - 9340 mRNA_972 0.36 0.7
108,197 + 9340 mRNA_972 0.37 0.2
108,215 + 9340 mRNA_972 0.39 -0.1
108,220 + 9340 mRNA_972 0.39 -0.7
108,228 - 9340 mRNA_972 0.40 1.7
108,231 - 9340 mRNA_972 0.40 -0.3
108,233 - 9340 mRNA_972 0.41 -0.1
108,233 + 9340 mRNA_972 0.41 1.8
108,234 - 9340 mRNA_972 0.41 0.3
108,247 - 9340 mRNA_972 0.42 1.7
108,248 + 9340 mRNA_972 0.42 -0.4
108,250 + 9340 mRNA_972 0.42 1.8
108,252 - 9340 mRNA_972 0.43 -1.9
108,254 + 9340 mRNA_972 0.43 -0.4
108,257 - 9340 mRNA_972 0.43 0.5
108,259 + 9340 mRNA_972 0.43 -1.0
108,261 - 9340 mRNA_972 0.44 -0.3
108,265 - 9340 mRNA_972 0.44 -0.2
108,266 + 9340 mRNA_972 0.44 -1.1
108,270 - 9340 mRNA_972 0.44 0.4
108,270 - 9340 mRNA_972 0.44 1.9
108,271 + 9340 mRNA_972 0.45 0.4
108,271 + 9340 mRNA_972 0.45 1.0
108,273 - 9340 mRNA_972 0.45 -0.2
108,286 - 9340 mRNA_972 0.46 0.6
108,293 - 9340 mRNA_972 0.47 0.1
108,297 - 9340 mRNA_972 0.47 1.4
108,298 - 9340 mRNA_972 0.47 0.0
108,298 + 9340 mRNA_972 0.47 -0.2
108,298 + 9340 mRNA_972 0.47 0.4
108,304 - 9340 mRNA_972 0.48 -0.3
108,314 - 9340 mRNA_972 0.49 -0.5
108,328 + 9340 mRNA_972 0.50 0.2
108,338 + 9340 mRNA_972 0.51 0.5
108,357 + 9340 mRNA_972 0.53 0.0
108,378 + 9340 mRNA_972 0.56 -0.2
108,378 - 9340 mRNA_972 0.56 1.1
108,390 + 9340 mRNA_972 0.57 -0.9
108,398 - 9340 mRNA_972 0.58 0.8
108,399 - 9340 mRNA_972 0.58 0.4
108,400 - 9340 mRNA_972 0.58 1.6
108,409 + 9340 mRNA_972 0.59 -0.1
108,424 + 9340 mRNA_972 0.60 2.7
108,433 + 9340 mRNA_972 0.61 -0.1
108,455 + 9340 mRNA_972 0.64 0.5
108,460 + 9340 mRNA_972 0.64 0.4
108,461 + 9340 mRNA_972 0.64 -0.3
108,462 - 9340 mRNA_972 0.64 -0.2
108,472 + 9340 mRNA_972 0.65 0.7
108,474 + 9340 mRNA_972 0.66 0.6
108,496 - 9340 mRNA_972 0.68 0.8
108,497 + 9340 mRNA_972 0.68 0.2
108,502 + 9340 mRNA_972 0.68 -0.1
108,503 + 9340 mRNA_972 0.69 -0.3
108,504 + 9340 mRNA_972 0.69 2.2
108,505 + 9340 mRNA_972 0.69 0.8
108,506 + 9340 mRNA_972 0.69 0.0
108,507 - 9340 mRNA_972 0.69 0.3
108,516 + 9340 mRNA_972 0.70 0.8
108,524 - 9340 mRNA_972 0.71 0.1
108,534 - 9340 mRNA_972 0.72 0.1
108,535 - 9340 mRNA_972 0.72 0.4
108,536 - 9340 mRNA_972 0.72 0.2
108,542 + 9340 mRNA_972 0.73 2.1
108,545 - 9340 mRNA_972 0.73 -1.0
108,546 - 9340 mRNA_972 0.73 0.6
108,547 + 9340 mRNA_972 0.73 0.7
108,554 - 9340 mRNA_972 0.74 2.0
108,555 + 9340 mRNA_972 0.74 -0.6
108,558 + 9340 mRNA_972 0.74 1.3
108,559 + 9340 mRNA_972 0.74 0.2
108,588 + 9340 mRNA_972 0.77 -0.1
108,597 - 9340 mRNA_972 0.78 0.2
108,626 + 9340 mRNA_972 0.81 0.7
108,647 + 9340 mRNA_972 0.83 0.7
108,651 - 9340 mRNA_972 0.84 -0.6
108,666 + 9340 mRNA_972 0.85 -0.3
108,762 + -0.3
108,772 + -0.3
108,772 + 0.8
108,783 + -0.5
108,789 - 1.4
108,794 - -0.2
108,796 + 0.6
108,801 + 1.4
108,802 + 0.7
108,803 + 0.7
108,807 + 0.0
108,807 + 0.3
108,808 + 0.7
108,816 - 1.0
108,818 + -0.4
108,830 - -0.2
108,836 - -0.2
108,930 - -0.2
108,940 + 2.0
108,947 - -0.8
108,972 - 1.5
108,988 + 1.4
109,059 + -0.2
109,094 - 2.3
109,098 + -0.1
109,100 - 0.8
109,238 + -1.6
109,682 - 9341 mRNA_973 0.17 -0.7
109,974 - 9341 mRNA_973 0.25 1.2
110,040 + 9341 mRNA_973 0.27 -0.1
110,106 - 9341 mRNA_973 0.28 -2.5
110,288 + 9341 mRNA_973 0.33 0.8
110,320 + 9341 mRNA_973 0.34 -1.8
110,427 + 9341 mRNA_973 0.37 2.7
110,829 - 9341 mRNA_973 0.47 0.1
111,855 + 9341 mRNA_973 0.74 -0.7
112,456 + 9341 mRNA_973 0.90 0.2
112,744 + -1.2
112,748 - -1.3
112,751 - -0.8
112,859 + 0.7
112,868 - -3.1
113,020 + 0.1
113,070 + 0.2
113,161 - -0.5
113,189 + -0.1