Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1 + 2.3
1 + 0.2
1 + 1.9
1 + 0.7
1 + -2.4
2 + 0.1
2 + -0.3
5 + 0.3
18 + 1.4
30 + -0.2
37 + 1.0
37 + 0.3
41 + -0.2
42 + -0.1
44 + -1.6
49 + 0.8
49 + 1.4
50 + 0.7
54 + -0.2
58 - 0.7
60 - -0.0
60 + 1.0
60 - -0.4
61 - 0.3
61 + 0.0
63 + 2.3
63 + -0.5
63 + -0.4
63 + 0.9
63 + 0.0
63 + 1.3
64 + 0.8
66 - 0.2
66 + -0.5
70 + 0.6
70 + 0.2
70 - 0.2
71 + 0.1
73 + 0.5
75 - 0.8
77 - 0.8
78 + 1.9
78 - -0.7
78 + -0.2
78 + 1.6
78 + 0.6
78 + 0.3
78 + 0.9
78 + 0.1
78 + 0.2
79 + 0.9
81 - 0.6
81 - 0.9
82 + 0.7
85 + 1.4
104 + 0.6
126 + 0.4
126 + 1.1
128 - 0.5
135 + 0.9
142 + -0.6
150 + 0.8
154 + -0.1
157 + 2.7
171 - 1.7
171 + 1.0
172 + -0.2
172 + 0.3
175 - 0.0
176 - 1.1
177 - 0.4
177 - 0.5
191 - -0.2
192 + 1.1
192 + 1.0
192 + 0.3
193 + 0.6
193 + 0.0
193 + -0.3
198 - -2.4
218 + 2.3
225 + 1.6
235 + -0.2
242 + 1.0
263 - -0.6
293 + -0.2
303 + -0.1
333 - 0.6
339 - 1.5
348 + 0.3
349 + -0.5
377 - 0.6
381 - 0.0
469 + -1.0
487 - 9298 mRNA_930 0.10 -0.8
722 + 9298 mRNA_930 0.29 0.2
1,641 - 1.5
1,656 - 0.2
1,768 - 0.2
1,778 - 2.6
1,794 + -0.7